Links
RNA secondary structure prediction
RNA tertiary structure prediction
- Assemble: a graphical tool to construct and study RNA architectures
- iFoldRNA: Interactive RNA Folding
- MC-Fold/MC-Sym
- MMB: MacroMolecule Builder (formerly RNABuilder)
- ModeRNA: A program for comparative RNA modeling
- NAB: Nucleic Acid Builder
- NAST/C2A: The Nucleic Acid Simulation Tool
- RNA2D3D: An interactive system for the conversion of RNA 2D structures to 3D and 3D modeling
- Rosetta RNA Denovo: Fragment assembly of RNA
RNA structural databases
- PDB: The RCSB Protein Data Bank
- NDB: The Nucleic Acid Database
- RNA FRABASE 2.0: RNA FRAgments search engine & dataBASE
- BPS: A database of RNA base-pair structures
- RNAJunction: A database of RNA junction and kissing loop structures
- Modomics: Database of RNA Modifications
RNA structure analysis & visualization
- RNAssess: a webserver for quality assessment of RNA 3D structures
- RNAlyzer: Structural comparison of model according to reference structure
- RNApdbee: RNA secondary structure extraction from PDB files
- BiBiServ: Bielefeld University Bioinformatics Server
- RNAView: Secondary Structure Viewer
- PseudoViewer: visualization of RNA pseudoknots of any type
- Vienna RNA Package: RNA Secondary Structure Prediction and Comparison
- ARTS: Alignment of RNA Tertiary Structures
- 3DNA: Analysis, rebuilding, and visualization of 3D RNA & DNA structures
- Jmol: An open-source Java viewer for chemical structures in 3D
- PyMOL: Molecular visualization system